| Current File : //lib64/python3.4/site-packages/numpy/core/tests/test_deprecations.py |
"""
Tests related to deprecation warnings. Also a convenient place
to document how deprecations should eventually be turned into errors.
"""
from __future__ import division, absolute_import, print_function
import datetime
import sys
import operator
import warnings
import numpy as np
from numpy.testing import (
run_module_suite, assert_raises, assert_warns, assert_no_warnings,
assert_array_equal, assert_, dec)
try:
import pytz
_has_pytz = True
except ImportError:
_has_pytz = False
class _VisibleDeprecationTestCase(object):
# Just as warning: warnings uses re.match, so the start of this message
# must match.
message = ''
def setUp(self):
self.warn_ctx = warnings.catch_warnings(record=True)
self.log = self.warn_ctx.__enter__()
# Do *not* ignore other DeprecationWarnings. Ignoring warnings
# can give very confusing results because of
# http://bugs.python.org/issue4180 and it is probably simplest to
# try to keep the tests cleanly giving only the right warning type.
# (While checking them set to "error" those are ignored anyway)
# We still have them show up, because otherwise they would be raised
warnings.filterwarnings("always", category=np.VisibleDeprecationWarning)
warnings.filterwarnings("always", message=self.message,
category=np.VisibleDeprecationWarning)
def tearDown(self):
self.warn_ctx.__exit__()
def assert_deprecated(self, function, num=1, ignore_others=False,
function_fails=False,
exceptions=(np.VisibleDeprecationWarning,),
args=(), kwargs={}):
"""Test if VisibleDeprecationWarnings are given and raised.
This first checks if the function when called gives `num`
VisibleDeprecationWarnings, after that it tries to raise these
VisibleDeprecationWarnings and compares them with `exceptions`.
The exceptions can be different for cases where this code path
is simply not anticipated and the exception is replaced.
Parameters
----------
function : callable
The function to test
num : int
Number of VisibleDeprecationWarnings to expect. This should
normally be 1.
ignore_others : bool
Whether warnings of the wrong type should be ignored (note that
the message is not checked)
function_fails : bool
If the function would normally fail, setting this will check for
warnings inside a try/except block.
exceptions : Exception or tuple of Exceptions
Exception to expect when turning the warnings into an error.
The default checks for DeprecationWarnings. If exceptions is
empty the function is expected to run successfully.
args : tuple
Arguments for `function`
kwargs : dict
Keyword arguments for `function`
"""
# reset the log
self.log[:] = []
try:
function(*args, **kwargs)
except (Exception if function_fails else tuple()):
pass
# just in case, clear the registry
num_found = 0
for warning in self.log:
if warning.category is np.VisibleDeprecationWarning:
num_found += 1
elif not ignore_others:
raise AssertionError(
"expected DeprecationWarning but got: %s" %
(warning.category,))
if num is not None and num_found != num:
msg = "%i warnings found but %i expected." % (len(self.log), num)
lst = [w.category for w in self.log]
raise AssertionError("\n".join([msg] + lst))
with warnings.catch_warnings():
warnings.filterwarnings("error", message=self.message,
category=np.VisibleDeprecationWarning)
try:
function(*args, **kwargs)
if exceptions != tuple():
raise AssertionError(
"No error raised during function call")
except exceptions:
if exceptions == tuple():
raise AssertionError(
"Error raised during function call")
def assert_not_deprecated(self, function, args=(), kwargs={}):
"""Test if VisibleDeprecationWarnings are given and raised.
This is just a shorthand for:
self.assert_deprecated(function, num=0, ignore_others=True,
exceptions=tuple(), args=args, kwargs=kwargs)
"""
self.assert_deprecated(function, num=0, ignore_others=True,
exceptions=tuple(), args=args, kwargs=kwargs)
class _DeprecationTestCase(object):
# Just as warning: warnings uses re.match, so the start of this message
# must match.
message = ''
def setUp(self):
self.warn_ctx = warnings.catch_warnings(record=True)
self.log = self.warn_ctx.__enter__()
# Do *not* ignore other DeprecationWarnings. Ignoring warnings
# can give very confusing results because of
# http://bugs.python.org/issue4180 and it is probably simplest to
# try to keep the tests cleanly giving only the right warning type.
# (While checking them set to "error" those are ignored anyway)
# We still have them show up, because otherwise they would be raised
warnings.filterwarnings("always", category=DeprecationWarning)
warnings.filterwarnings("always", message=self.message,
category=DeprecationWarning)
def tearDown(self):
self.warn_ctx.__exit__()
def assert_deprecated(self, function, num=1, ignore_others=False,
function_fails=False,
exceptions=(DeprecationWarning,), args=(), kwargs={}):
"""Test if DeprecationWarnings are given and raised.
This first checks if the function when called gives `num`
DeprecationWarnings, after that it tries to raise these
DeprecationWarnings and compares them with `exceptions`.
The exceptions can be different for cases where this code path
is simply not anticipated and the exception is replaced.
Parameters
----------
function : callable
The function to test
num : int
Number of DeprecationWarnings to expect. This should normally be 1.
ignore_others : bool
Whether warnings of the wrong type should be ignored (note that
the message is not checked)
function_fails : bool
If the function would normally fail, setting this will check for
warnings inside a try/except block.
exceptions : Exception or tuple of Exceptions
Exception to expect when turning the warnings into an error.
The default checks for DeprecationWarnings. If exceptions is
empty the function is expected to run successfully.
args : tuple
Arguments for `function`
kwargs : dict
Keyword arguments for `function`
"""
# reset the log
self.log[:] = []
try:
function(*args, **kwargs)
except (Exception if function_fails else tuple()):
pass
# just in case, clear the registry
num_found = 0
for warning in self.log:
if warning.category is DeprecationWarning:
num_found += 1
elif not ignore_others:
raise AssertionError(
"expected DeprecationWarning but got: %s" %
(warning.category,))
if num is not None and num_found != num:
msg = "%i warnings found but %i expected." % (len(self.log), num)
lst = [str(w.category) for w in self.log]
raise AssertionError("\n".join([msg] + lst))
with warnings.catch_warnings():
warnings.filterwarnings("error", message=self.message,
category=DeprecationWarning)
try:
function(*args, **kwargs)
if exceptions != tuple():
raise AssertionError(
"No error raised during function call")
except exceptions:
if exceptions == tuple():
raise AssertionError(
"Error raised during function call")
def assert_not_deprecated(self, function, args=(), kwargs={}):
"""Test if DeprecationWarnings are given and raised.
This is just a shorthand for:
self.assert_deprecated(function, num=0, ignore_others=True,
exceptions=tuple(), args=args, kwargs=kwargs)
"""
self.assert_deprecated(function, num=0, ignore_others=True,
exceptions=tuple(), args=args, kwargs=kwargs)
class TestBooleanUnaryMinusDeprecation(_DeprecationTestCase):
"""Test deprecation of unary boolean `-`. While + and * are well
defined, unary - is not and even a corrected form seems to have
no real uses.
The deprecation process was started in NumPy 1.9.
"""
message = r"numpy boolean negative, the `-` operator, .*"
def test_unary_minus_operator_deprecation(self):
array = np.array([True])
generic = np.bool_(True)
# Unary minus/negative ufunc:
self.assert_deprecated(operator.neg, args=(array,))
self.assert_deprecated(operator.neg, args=(generic,))
class TestBooleanBinaryMinusDeprecation(_DeprecationTestCase):
"""Test deprecation of binary boolean `-`. While + and * are well
defined, binary - is not and even a corrected form seems to have
no real uses.
The deprecation process was started in NumPy 1.9.
"""
message = r"numpy boolean subtract, the `-` operator, .*"
def test_operator_deprecation(self):
array = np.array([True])
generic = np.bool_(True)
# Minus operator/subtract ufunc:
self.assert_deprecated(operator.sub, args=(array, array))
self.assert_deprecated(operator.sub, args=(generic, generic))
class TestRankDeprecation(_DeprecationTestCase):
"""Test that np.rank is deprecated. The function should simply be
removed. The VisibleDeprecationWarning may become unnecessary.
"""
def test(self):
a = np.arange(10)
assert_warns(np.VisibleDeprecationWarning, np.rank, a)
class TestComparisonDeprecations(_DeprecationTestCase):
"""This tests the deprecation, for non-element-wise comparison logic.
This used to mean that when an error occurred during element-wise comparison
(i.e. broadcasting) NotImplemented was returned, but also in the comparison
itself, False was given instead of the error.
Also test FutureWarning for the None comparison.
"""
message = "elementwise.* comparison failed; .*"
def test_normal_types(self):
for op in (operator.eq, operator.ne):
# Broadcasting errors:
self.assert_deprecated(op, args=(np.zeros(3), []))
a = np.zeros(3, dtype='i,i')
# (warning is issued a couple of times here)
self.assert_deprecated(op, args=(a, a[:-1]), num=None)
# Element comparison error (numpy array can't be compared).
a = np.array([1, np.array([1,2,3])], dtype=object)
b = np.array([1, np.array([1,2,3])], dtype=object)
self.assert_deprecated(op, args=(a, b), num=None)
def test_string(self):
# For two string arrays, strings always raised the broadcasting error:
a = np.array(['a', 'b'])
b = np.array(['a', 'b', 'c'])
assert_raises(ValueError, lambda x, y: x == y, a, b)
# The empty list is not cast to string, as this is only to document
# that fact (it likely should be changed). This means that the
# following works (and returns False) due to dtype mismatch:
a == []
def test_none_comparison(self):
# Test comparison of None, which should result in element-wise
# comparison in the future. [1, 2] == None should be [False, False].
with warnings.catch_warnings():
warnings.filterwarnings('always', '', FutureWarning)
assert_warns(FutureWarning, operator.eq, np.arange(3), None)
assert_warns(FutureWarning, operator.ne, np.arange(3), None)
with warnings.catch_warnings():
warnings.filterwarnings('error', '', FutureWarning)
assert_raises(FutureWarning, operator.eq, np.arange(3), None)
assert_raises(FutureWarning, operator.ne, np.arange(3), None)
def test_scalar_none_comparison(self):
# Scalars should still just return False and not give a warnings.
# The comparisons are flagged by pep8, ignore that.
with warnings.catch_warnings(record=True) as w:
warnings.filterwarnings('always', '', FutureWarning)
assert_(not np.float32(1) == None)
assert_(not np.str_('test') == None)
# This is dubious (see below):
assert_(not np.datetime64('NaT') == None)
assert_(np.float32(1) != None)
assert_(np.str_('test') != None)
# This is dubious (see below):
assert_(np.datetime64('NaT') != None)
assert_(len(w) == 0)
# For documentation purposes, this is why the datetime is dubious.
# At the time of deprecation this was no behaviour change, but
# it has to be considered when the deprecations are done.
assert_(np.equal(np.datetime64('NaT'), None))
def test_void_dtype_equality_failures(self):
class NotArray(object):
def __array__(self):
raise TypeError
# Needed so Python 3 does not raise DeprecationWarning twice.
def __ne__(self, other):
return NotImplemented
self.assert_deprecated(lambda: np.arange(2) == NotArray())
self.assert_deprecated(lambda: np.arange(2) != NotArray())
struct1 = np.zeros(2, dtype="i4,i4")
struct2 = np.zeros(2, dtype="i4,i4,i4")
assert_warns(FutureWarning, lambda: struct1 == 1)
assert_warns(FutureWarning, lambda: struct1 == struct2)
assert_warns(FutureWarning, lambda: struct1 != 1)
assert_warns(FutureWarning, lambda: struct1 != struct2)
def test_array_richcompare_legacy_weirdness(self):
# It doesn't really work to use assert_deprecated here, b/c part of
# the point of assert_deprecated is to check that when warnings are
# set to "error" mode then the error is propagated -- which is good!
# But here we are testing a bunch of code that is deprecated *because*
# it has the habit of swallowing up errors and converting them into
# different warnings. So assert_warns will have to be sufficient.
assert_warns(FutureWarning, lambda: np.arange(2) == "a")
assert_warns(FutureWarning, lambda: np.arange(2) != "a")
# No warning for scalar comparisons
with warnings.catch_warnings():
warnings.filterwarnings("error")
assert_(not (np.array(0) == "a"))
assert_(np.array(0) != "a")
assert_(not (np.int16(0) == "a"))
assert_(np.int16(0) != "a")
for arg1 in [np.asarray(0), np.int16(0)]:
struct = np.zeros(2, dtype="i4,i4")
for arg2 in [struct, "a"]:
for f in [operator.lt, operator.le, operator.gt, operator.ge]:
if sys.version_info[0] >= 3:
# py3
with warnings.catch_warnings() as l:
warnings.filterwarnings("always")
assert_raises(TypeError, f, arg1, arg2)
assert_(not l)
else:
# py2
assert_warns(DeprecationWarning, f, arg1, arg2)
class TestIdentityComparisonDeprecations(_DeprecationTestCase):
"""This tests the equal and not_equal object ufuncs identity check
deprecation. This was due to the usage of PyObject_RichCompareBool.
This tests that for example for `a = np.array([np.nan], dtype=object)`
`a == a` it is warned that False and not `np.nan is np.nan` is returned.
Should be kept in sync with TestComparisonDeprecations and new tests
added when the deprecation is over. Requires only removing of @identity@
(and blocks) from the ufunc loops.c.src of the OBJECT comparisons.
"""
message = "numpy .* will not check object identity in the future."
def test_identity_equality_mismatch(self):
a = np.array([np.nan], dtype=object)
with warnings.catch_warnings():
warnings.filterwarnings('always', '', FutureWarning)
assert_warns(FutureWarning, np.equal, a, a)
assert_warns(FutureWarning, np.not_equal, a, a)
with warnings.catch_warnings():
warnings.filterwarnings('error', '', FutureWarning)
assert_raises(FutureWarning, np.equal, a, a)
assert_raises(FutureWarning, np.not_equal, a, a)
# And the other do not warn:
with np.errstate(invalid='ignore'):
np.less(a, a)
np.greater(a, a)
np.less_equal(a, a)
np.greater_equal(a, a)
def test_comparison_error(self):
class FunkyType(object):
def __eq__(self, other):
raise TypeError("I won't compare")
def __ne__(self, other):
raise TypeError("I won't compare")
a = np.array([FunkyType()])
self.assert_deprecated(np.equal, args=(a, a))
self.assert_deprecated(np.not_equal, args=(a, a))
def test_bool_error(self):
# The comparison result cannot be interpreted as a bool
a = np.array([np.array([1, 2, 3]), None], dtype=object)
self.assert_deprecated(np.equal, args=(a, a))
self.assert_deprecated(np.not_equal, args=(a, a))
class TestAlterdotRestoredotDeprecations(_DeprecationTestCase):
"""The alterdot/restoredot functions are deprecated.
These functions no longer do anything in numpy 1.10, so
they should not be used.
"""
def test_alterdot_restoredot_deprecation(self):
self.assert_deprecated(np.alterdot)
self.assert_deprecated(np.restoredot)
class TestBooleanIndexShapeMismatchDeprecation():
"""Tests deprecation for boolean indexing where the boolean array
does not match the input array along the given dimensions.
"""
message = r"boolean index did not match indexed array"
def test_simple(self):
arr = np.ones((5, 4, 3))
index = np.array([True])
#self.assert_deprecated(arr.__getitem__, args=(index,))
assert_warns(np.VisibleDeprecationWarning,
arr.__getitem__, index)
index = np.array([False] * 6)
#self.assert_deprecated(arr.__getitem__, args=(index,))
assert_warns(np.VisibleDeprecationWarning,
arr.__getitem__, index)
index = np.zeros((4, 4), dtype=bool)
#self.assert_deprecated(arr.__getitem__, args=(index,))
assert_warns(np.VisibleDeprecationWarning,
arr.__getitem__, index)
#self.assert_deprecated(arr.__getitem__, args=((slice(None), index),))
assert_warns(np.VisibleDeprecationWarning,
arr.__getitem__, (slice(None), index))
class TestDatetime64Timezone(_DeprecationTestCase):
"""Parsing of datetime64 with timezones deprecated in 1.11.0, because
datetime64 is now timezone naive rather than UTC only.
It will be quite a while before we can remove this, because, at the very
least, a lot of existing code uses the 'Z' modifier to avoid conversion
from local time to UTC, even if otherwise it handles time in a timezone
naive fashion.
"""
def test_string(self):
self.assert_deprecated(np.datetime64, args=('2000-01-01T00+01',))
self.assert_deprecated(np.datetime64, args=('2000-01-01T00Z',))
@dec.skipif(not _has_pytz, "The pytz module is not available.")
def test_datetime(self):
tz = pytz.timezone('US/Eastern')
dt = datetime.datetime(2000, 1, 1, 0, 0, tzinfo=tz)
self.assert_deprecated(np.datetime64, args=(dt,))
class TestNonCContiguousViewDeprecation(_DeprecationTestCase):
"""View of non-C-contiguous arrays deprecated in 1.11.0.
The deprecation will not be raised for arrays that are both C and F
contiguous, as C contiguous is dominant. There are more such arrays
with relaxed stride checking than without so the deprecation is not
as visible with relaxed stride checking in force.
"""
def test_fortran_contiguous(self):
self.assert_deprecated(np.ones((2,2)).T.view, args=(np.complex,))
self.assert_deprecated(np.ones((2,2)).T.view, args=(np.int8,))
class TestInvalidOrderParameterInputForFlattenArrayDeprecation(_DeprecationTestCase):
"""Invalid arguments to the ORDER parameter in array.flatten() should not be
allowed and should raise an error. However, in the interests of not breaking
code that may inadvertently pass invalid arguments to this parameter, a
DeprecationWarning will be issued instead for the time being to give developers
time to refactor relevant code.
"""
def test_flatten_array_non_string_arg(self):
x = np.zeros((3, 5))
self.message = ("Non-string object detected for "
"the array ordering. Please pass "
"in 'C', 'F', 'A', or 'K' instead")
self.assert_deprecated(x.flatten, args=(np.pi,))
def test_flatten_array_invalid_string_arg(self):
# Tests that a DeprecationWarning is raised
# when a string of length greater than one
# starting with "C", "F", "A", or "K" (case-
# and unicode-insensitive) is passed in for
# the ORDER parameter. Otherwise, a TypeError
# will be raised!
x = np.zeros((3, 5))
self.message = ("Non length-one string passed "
"in for the array ordering. Please "
"pass in 'C', 'F', 'A', or 'K' instead")
self.assert_deprecated(x.flatten, args=("FACK",))
class TestArrayDataAttributeAssignmentDeprecation(_DeprecationTestCase):
"""Assigning the 'data' attribute of an ndarray is unsafe as pointed
out in gh-7093. Eventually, such assignment should NOT be allowed, but
in the interests of maintaining backwards compatibility, only a Deprecation-
Warning will be raised instead for the time being to give developers time to
refactor relevant code.
"""
def test_data_attr_assignment(self):
a = np.arange(10)
b = np.linspace(0, 1, 10)
self.message = ("Assigning the 'data' attribute is an "
"inherently unsafe operation and will "
"be removed in the future.")
self.assert_deprecated(a.__setattr__, args=('data', b.data))
class TestLinspaceInvalidNumParameter(_DeprecationTestCase):
"""Argument to the num parameter in linspace that cannot be
safely interpreted as an integer is deprecated in 1.12.0.
Argument to the num parameter in linspace that cannot be
safely interpreted as an integer should not be allowed.
In the interest of not breaking code that passes
an argument that could still be interpreted as an integer, a
DeprecationWarning will be issued for the time being to give
developers time to refactor relevant code.
"""
def test_float_arg(self):
# 2016-02-25, PR#7328
self.assert_deprecated(np.linspace, args=(0, 10, 2.5))
class TestBinaryReprInsufficientWidthParameterForRepresentation(_DeprecationTestCase):
"""
If a 'width' parameter is passed into ``binary_repr`` that is insufficient to
represent the number in base 2 (positive) or 2's complement (negative) form,
the function used to silently ignore the parameter and return a representation
using the minimal number of bits needed for the form in question. Such behavior
is now considered unsafe from a user perspective and will raise an error in the future.
"""
def test_insufficient_width_positive(self):
args = (10,)
kwargs = {'width': 2}
self.message = ("Insufficient bit width provided. This behavior "
"will raise an error in the future.")
self.assert_deprecated(np.binary_repr, args=args, kwargs=kwargs)
def test_insufficient_width_negative(self):
args = (-5,)
kwargs = {'width': 2}
self.message = ("Insufficient bit width provided. This behavior "
"will raise an error in the future.")
self.assert_deprecated(np.binary_repr, args=args, kwargs=kwargs)
class TestNumericStyleTypecodes(_DeprecationTestCase):
"""
Deprecate the old numeric-style dtypes, which are especially
confusing for complex types, e.g. Complex32 -> complex64. When the
deprecation cycle is complete, the check for the strings should be
removed from PyArray_DescrConverter in descriptor.c, and the
deprecated keys should not be added as capitalized aliases in
_add_aliases in numerictypes.py.
"""
def test_all_dtypes(self):
deprecated_types = [
'Bool', 'Complex32', 'Complex64', 'Float16', 'Float32', 'Float64',
'Int8', 'Int16', 'Int32', 'Int64', 'Object0', 'Timedelta64',
'UInt8', 'UInt16', 'UInt32', 'UInt64', 'Void0'
]
if sys.version_info[0] < 3:
deprecated_types.extend(['Unicode0', 'String0'])
for dt in deprecated_types:
self.assert_deprecated(np.dtype, exceptions=(TypeError,),
args=(dt,))
class TestAccumulateKeepDims(_DeprecationTestCase):
"""
Deprecate the keepdims argument to np.ufunc.accumulate, which was never used or documented
"""
def test_keepdims(self):
with warnings.catch_warnings():
warnings.filterwarnings('always', '', FutureWarning)
assert_warns(FutureWarning, np.add.accumulate, [1], keepdims=True)
class TestTestDeprecated(object):
def test_assert_deprecated(self):
test_case_instance = _DeprecationTestCase()
test_case_instance.setUp()
assert_raises(AssertionError,
test_case_instance.assert_deprecated,
lambda: None)
def foo():
warnings.warn("foo", category=DeprecationWarning, stacklevel=2)
test_case_instance.assert_deprecated(foo)
test_case_instance.tearDown()
class TestClassicIntDivision(_DeprecationTestCase):
"""
See #7949. Deprecate the numeric-style dtypes with -3 flag in python 2
if used for division
List of data types: http://docs.scipy.org/doc/numpy/user/basics.types.html
"""
def test_int_dtypes(self):
#scramble types and do some mix and match testing
deprecated_types = [
'bool_', 'int_', 'intc', 'uint8', 'int8', 'uint64', 'int32', 'uint16',
'intp', 'int64', 'uint32', 'int16'
]
if sys.version_info[0] < 3 and sys.py3kwarning:
import operator as op
dt2 = 'bool_'
for dt1 in deprecated_types:
a = np.array([1,2,3], dtype=dt1)
b = np.array([1,2,3], dtype=dt2)
self.assert_deprecated(op.div, args=(a,b))
dt2 = dt1
if __name__ == "__main__":
run_module_suite()